BDgene

SNP Report

Basic Info
Name rs9513877 dbSNP Ensembl
Location chr13:101273988 - 101273988(1)
Variant Alleles G/A
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.260583
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000251127, ENST00000470333, ENST00000497170); non_coding_transcript_variant(ENST00000470333, ENST00000497170)
No. of Studies 3 (Positive: 0; Negative: 2; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 3)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Ollila, H. M.,2009 G/A FBAT: P-value = 0.840305 FBAT: P-value = 0.840305 No significant association was observed No significant association was observed Negative
Baum, A. E., 2008 (b) G Random effects P-value = 0.071; DerSimonian-Laird (random e...... Random effects P-value = 0.071; DerSimonian-Laird (random effects) OR (95% CI)=1.18 (0.99-1.39) More... Negative
Baum, A. E., 2008 (a) G P-value = 0.0005 when genotyped individually in the test sam...... P-value = 0.0005 when genotyped individually in the test sample (NIMH); P-value = 0.021 when individually genotyped in the Replication sample (German); P-value = 8.10E-05 in the combined dataset. OR (95% CI)=1.26 (1.12-1.41) More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NALCN sodium leak channel, non selective 13q32.3 2(0/2/0)

SNPs in LD with rs9513877 (count: 38) View in gBrowse (chr13:101185737..101273988 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 38)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016