BDgene

SNP Report

Basic Info
Name rs9328157 dbSNP Ensembl
Location chr6:3267476 - 3267476(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.193091
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000473000); downstream_gene_variant(ENST00000380302, ENST00000406686, ENST00000436008, ENST00000497691); intron_variant(ENST00000324987, ENST00000380305, ENST00000380306, ENST00000419065, ENST00000438998, ENST00000451246, ENST00000454610, ENST00000509933); NMD_transcript_variant(ENST00000324987, ENST00000509933)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 P(unadj)-value=3.68E-05, OR (unadj)=0.6584, P(adj)-value=0...... P(unadj)-value=3.68E-05, OR (unadj)=0.6584, P(adj)-value=0.000149, OR(adj)=0.6792 More... Listing suggestive significant genic SNPs for combined Toron...... Listing suggestive significant genic SNPs for combined Toronto and London GWAS for which there are 4 or more suggestive significant SNPs among the top 1000, and for which no other positive reports have been published to date. More... Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PSMG4 proteasome (prosome, macropain) assembly chaperone 4 6p25.2 1(0/1/0)
SLC22A23 solute carrier family 22, member 23 6p25.2 1(1/0/0)

SNPs in LD with rs9328157 (count: 27) View in gBrowse (chr6:3255553..3291681 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 27)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)