BDgene

SNP Report

Basic Info
Name rs9315897 dbSNP Ensembl
Location chr13:42164846 - 42164846(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.128395
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000261491, ENST00000337343, ENST00000379274, ENST00000498255, ENST00000536612, ENST00000626247, ENST00000627777, ENST00000628433); NMD_transcript_variant(ENST00000626247, ENST00000627777); non_coding_transcript_variant(ENST00000498255)
No. of Studies 3 (Positive: 0; Negative: 3; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? YES

SNP related studies (count: 3)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Takata, A.,2011(a) T/C Fisher's exact test: allele P-value = 0.3211, genotype P-val...... Fisher's exact test: allele P-value = 0.3211, genotype P-value = 0.5399 More... No significant association was observed in BD. No significant association was observed in BD. Negative
Zeng, Z.,2011 C Allelic association: P-value = 0.089, permutated P-value = 0...... Allelic association: P-value = 0.089, permutated P-value = 0.547 for BPD; P-value = 0.122, permutated P-value = 0.669 for BPDI More... No significant association was observed in BD. No significant association was observed in BD. Negative
Yosifova, A.,2009 C/T Allelic association: P-value = 0.22 Allelic association: P-value = 0.22 No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DGKH diacylglycerol kinase, eta 13q13.3 6(3/3/0)

SNPs in LD with rs9315897 (count: 45) View in gBrowse (chr13:42074728..42257219 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 45)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Zeng, Z.,2011 Allelic association:P-value = 0.583, permutated P-value = 1 for SCZ No significant association was observed after permutation. Negative

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Zeng, Z.,2011 Allelic association:P-value > 0.05 for MDD. No significant association was observed after permutation. Negative

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016