SNP Report

Basic Info
Name rs7204975 dbSNP Ensembl
Location chr16:6749870 - 6749870(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.157348
Functional Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000516271); intron_variant(ENST00000422070, ENST00000535565, ENST00000547372, ENST00000547427, ENST00000547605, ENST00000550418, ENST00000551752, ENST00000552089, ENST00000553186, ENST00000569895); non_coding_transcript_variant(ENST00000547427, ENST00000569895)
No. of Studies 2 (Positive: 0; Negative: 2; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Baum, A. E., 2008 (a) C P-value = 0.001 when genotyped individually in the test samp...... P-value = 0.001 when genotyped individually in the test sample (NIMH); P-value = 0.542 when individually genotyped in the Replication sample (German); P-value = 0.533 in the combined dataset. OR (95% CI)=NS More... Negative
Ollila, H. M.,2009 C/T FBAT: P-value = 0.478677 FBAT: P-value = 0.478677 No significant association was observed No significant association was observed Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RBFOX1 RNA binding protein, fox-1 homolog (C. elegans) 1 16p13.3 6(2/2/2)
RNU7-99P RNA, U7 small nuclear 99 pseudogene 16p13.3 Mapped by Literature SNP

SNPs in LD with rs7204975 (count: 5) View in gBrowse (chr16:6743932..6753551 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 5)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)