SNP Report

Basic Info

Name	rs7204975 dbSNP Ensembl
Location	chr16:6749870 - 6749870(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.157348
Functional Annotation	downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000516271); intron_variant(ENST00000422070, ENST00000535565, ENST00000547372, ENST00000547427, ENST00000547605, ENST00000550418, ENST00000551752, ENST00000552089, ENST00000553186, ENST00000569895); non_coding_transcript_variant(ENST00000547427, ENST00000569895)
No. of Studies	2 (Positive: 0; Negative: 2; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 2)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Baum, A. E., 2008 (a)		C	P-value = 0.001 when genotyped individually in the test samp...... P-value = 0.001 when genotyped individually in the test sample (NIMH); P-value = 0.542 when individually genotyped in the Replication sample (German); P-value = 0.533 in the combined dataset. OR (95% CI)=NS More...		Negative
Ollila, H. M.,2009	C/T		FBAT: P-value = 0.478677 FBAT: P-value = 0.478677	No significant association was observed No significant association was observed	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
RBFOX1	RNA binding protein, fox-1 homolog (C. elegans) 1	16p13.3	6(2/2/2)
RNU7-99P	RNA, U7 small nuclear 99 pseudogene	16p13.3	Mapped by Literature SNP

SNPs in LD with rs7204975 (count: 5) View in gBrowse (chr16:6743932..6753551 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs11643107	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1.0[CEU]
rs11647951	downstream_gene_variant; intron_variant; non_coding_transcript_variant	0.94[CEU]
rs4786120	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1.0[CEU]
rs8055635	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]
rs13334520	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]; 0.923[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)