SNP Report

Basic Info
Name rs593713 dbSNP Ensembl
Location chr18:11887658 - 11887658(1)
Variant Alleles G/A
Minor Allele G
Minor Allele Frequence 0.496206
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000334049, ENST00000586364, ENST00000588186, ENST00000588191, ENST00000589267); intron_variant(ENST00000309976, ENST00000317235, ENST00000317251, ENST00000344987, ENST00000496196, ENST00000587724, ENST00000588072, ENST00000589731, ENST00000592331, ENST00000592447, ENST00000592894, ENST00000592977); NMD_transcript_variant(ENST00000317251, ENST00000496196); non_coding_transcript_variant(ENST00000589731, ENST00000592447, ENST00000592894); upstream_gene_variant(ENST00000592306, ENST00000592755)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Lohoff, F. W., 2010 G/A genotype test P-value = 0.122, allele test P-value = 0.051 genotype test P-value = 0.122, allele test P-value = 0.051 trend towards association trend towards association Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
MPPE1 metallophosphoesterase 1 18p11.21 2(2/0/0)
GNAL guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type 18p11.22-p11.21 2(0/2/0)

SNPs in LD with rs593713 (count: 0) View in gBrowse (chr18:11887658..11887658 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)