BDgene

SNP Report

Basic Info
Name rs496499 dbSNP Ensembl
Location chr15:41106118 - 41106118(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.135783
Functional Annotation intron_variant; NMD_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000361937, ENST00000401393, ENST00000558357, ENST00000616814); NMD_transcript_variant(ENST00000558357); upstream_gene_variant(ENST00000558168)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 T/C P-value=8.2E-05 P-value=8.2E-05 Top 132 SNPs (showing suggestive association to BD in our CA...... Top 132 SNPs (showing suggestive association to BD in our CAMH family cohort: p<0.0001). More... Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CYCSP2 cytochrome c, somatic pseudogene 2 15q15.1 Mapped by Literature SNP
INO80 INO80 complex subunit 15q15.1 1(0/1/0)

SNPs in LD with rs496499 (count: 22) View in gBrowse (chr15:40985976..41128920 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 22)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)