BDgene

SNP Report

Basic Info
Name rs496499 dbSNP Ensembl
Location chr15:41106118 - 41106118(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.135783
Functional Annotation intron_variant; NMD_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000361937, ENST00000401393, ENST00000558357, ENST00000616814); NMD_transcript_variant(ENST00000558357); upstream_gene_variant(ENST00000558168)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 T/C P-value=8.2E-05 P-value=8.2E-05 Top 132 SNPs (showing suggestive association to BD in our CA...... Top 132 SNPs (showing suggestive association to BD in our CAMH family cohort: p<0.0001). More... Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CYCSP2 cytochrome c, somatic pseudogene 2 15q15.1 Mapped by Literature SNP
INO80 INO80 complex subunit 15q15.1 1(0/1/0)

SNPs in LD with rs496499 (count: 22) View in gBrowse (chr15:40985976..41128920 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 22)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
To view this website normally, please make sure to allow Flash to run from the local filesystem in the security settings panel.
Last update: March 31, 2016