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SNP Report
Basic Info
| Name | rs385440 dbSNP Ensembl | ||
|---|---|---|---|
| Location | chr22:18913577 - 18913577(1) | ||
| Variant Alleles | A/G | ||
| Minor Allele | A | ||
| Minor Allele Frequence | 0.158147 | ||
| Functional Annotation | 3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant. | ||
| Consequence to Transcript | 3_prime_UTR_variant(ENST00000483718); downstream_gene_variant(ENST00000331444, ENST00000413981, ENST00000427407, ENST00000436645, ENST00000477156, ENST00000480608, ENST00000609229); intron_variant(ENST00000313755, ENST00000334029, ENST00000357068, ENST00000420436, ENST00000429300, ENST00000482858, ENST00000491604, ENST00000610940); NMD_transcript_variant(ENST00000483718); non_coding_transcript_variant(ENST00000313755, ENST00000429300, ENST00000482858, ENST00000491604) | ||
| No. of Studies | 1 (Positive: 1; Negative: 0; Trend: 0) | ||
| Source | Literature | ||
| Overlap with SZ? | NO | ||
| Overlap with MDD? | NO | ||
SNP related studies (count: 1)
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Studies (Positive/Negative/Trend)  |
|---|---|---|---|
| DGCR6 | DiGeorge syndrome critical region gene 6 | 22q11.21 | 1(0/1/0) |
| PRODH | proline dehydrogenase (oxidase) 1 | 22q11.2 | 4(0/4/0) |
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 8)
Overlap with SZ from cross-disorder studies (count: 0)
Overlap with MDD from cross-disorder studies (count: 0)