BDgene

SNP Report

Basic Info
Name rs3766084 dbSNP Ensembl
Location chr1:169269320 - 169269320(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.213858
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000367811, ENST00000472647, ENST00000480478, ENST00000483228, ENST00000525440, ENST00000528517); NMD_transcript_variant(ENST00000525440, ENST00000528517); non_coding_transcript_variant(ENST00000480478, ENST00000483228)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 C/T P-value=9.89E-05 P-value=9.89E-05 Top 132 SNPs (showing suggestive association to BD in our CA...... Top 132 SNPs (showing suggestive association to BD in our CAMH family cohort: p<0.0001). More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NME7 NME/NM23 family member 7 1q24.2 1(0/1/0)

SNPs in LD with rs3766084 (count: 43) View in gBrowse (chr1:169118256..169467592 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 43)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016