SNP Report

Basic Info

Name	rs2965184 dbSNP Ensembl
Location	chr19:19434619 - 19434619(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.120607
Functional Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000360315, ENST00000404158, ENST00000417582, ENST00000432704, ENST00000448576, ENST00000457895, ENST00000494516, ENST00000609040); NMD_transcript_variant(ENST00000609040); non_coding_transcript_variant(ENST00000448576); upstream_gene_variant(ENST00000385086)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Forstner, A. J., 2015			P-value=7.23E-7 P-value=7.23E-7	After correction for multiple testing, nine miRNAs showed a ...... After correction for multiple testing, nine miRNAs showed a significant association with BD. More...	Trend

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GATAD2A	GATA zinc finger domain containing 2A	19p13.11	Mapped by Literature SNP
MIR640	microRNA 640	19p13.11	Mapped by Literature SNP

SNPs in LD with rs2965184 (count: 40) View in gBrowse (chr19:19248691..19546389 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 40)

rs_ID	Functional Annotation	r²[population]
rs2010506	3_prime_UTR_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[TSI]
rs8110171	intron_variant; NMD_transcript_variant	1.0[CEU]
rs11085264	downstream_gene_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs7252453	downstream_gene_variant; synonymous_variant	0.936[CEU]
rs4808968	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs11555053	3_prime_UTR_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; synonymous_variant	0.811[CEU]; 1.0[TSI]
rs2965201		1.0[CEU]; 1.0[TSI]
rs2916070	intron_variant; NMD_transcript_variant; non_coding_transcript_variant	1.0[CEU]; 1.0[TSI]
rs1036215	3_prime_UTR_variant; downstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs4808934	downstream_gene_variant; intron_variant; non_coding_transcript_variant	0.811[CEU]; 0.965[TSI]
rs2965190	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.832[CEU]; 0.932[TSI]
rs756997	3_prime_UTR_variant; downstream_gene_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	1.0[CEU]
rs8110250	intron_variant; NMD_transcript_variant	1.0[CEU]
rs17751061	3_prime_UTR_variant; downstream_gene_variant; intron_variant; missense_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	0.874[CEU]; 1.0[TSI]
rs10423874	intron_variant; non_coding_transcript_variant	0.867[CEU]
rs2060274	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]
rs1560687	intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[TSI]
rs998732	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.811[CEU]; 1.0[TSI]
rs4808951	downstream_gene_variant; intron_variant; NMD_transcript_variant	1.0[CEU]
rs6511027	intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	0.81[CEU]; 0.965[TSI]
rs16996127	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs4808933	downstream_gene_variant; upstream_gene_variant	0.811[CEU]
rs10401714	downstream_gene_variant; upstream_gene_variant	0.811[CEU]
rs8105642	intron_variant; NMD_transcript_variant	1.0[CEU]
rs8102502	downstream_gene_variant; intron_variant; non_coding_transcript_variant	0.939[CEU]; 0.965[TSI]
rs17216041	3_prime_UTR_variant; downstream_gene_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	0.811[CEU]; 1.0[TSI]
rs754256	downstream_gene_variant; intron_variant; NMD_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs11670882	downstream_gene_variant; intron_variant; upstream_gene_variant	0.939[CEU]; 0.965[TSI]
rs4808206	3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs2965195	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs11669730	downstream_gene_variant; upstream_gene_variant	0.882[CEU]; 1.0[TSI]
rs4808962	downstream_gene_variant; intron_variant; NMD_transcript_variant; upstream_gene_variant	1.0[CEU]
rs10407933	downstream_gene_variant; upstream_gene_variant	0.81[CEU]
rs2011503	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs2965186	intron_variant; NMD_transcript_variant	1.0[CEU]; 1.0[TSI]
rs17684164	5_prime_UTR_variant; NMD_transcript_variant; upstream_gene_variant	1.0[CEU]
rs2060275	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]
rs751857	intron_variant; NMD_transcript_variant; non_coding_transcript_variant	0.872[TSI]
rs11670775	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs7250233	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)