SNP Report

Basic Info

Name	rs2852571 dbSNP Ensembl
Location	chr6:101554216 - 101554216(1)
Variant Alleles	T/G
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.476637
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000358361, ENST00000369138, ENST00000413795, ENST00000421544)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Xu, W., 2014	T/G		P-value=4.18E-05 P-value=4.18E-05	Top 132 SNPs (showing suggestive association to BD in our CA...... Top 132 SNPs (showing suggestive association to BD in our CAMH family cohort: p<0.0001). More...	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GRIK5	glutamate receptor, ionotropic, kainate 5	19q13.2	2(1/0/1)
GRIK2	glutamate receptor, ionotropic, kainate 2	6q16.3	3(1/1/1)

SNPs in LD with rs2852571 (count: 4) View in gBrowse (chr6:101536243..101559352 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs2749081	intron_variant	0.865[TSI]
rs2518311	intron_variant	1.0[CEU]; 0.977[TSI]
rs2749075	intron_variant	1.0[CEU]
rs2852577	intron_variant	1.0[CEU]; 0.977[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)