BDgene

SNP Report

Basic Info
Name rs2420864 dbSNP Ensembl
Location chr2:124459809 - 124459809(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele Frequence 0.0
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000431078)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 T/C Adjusted P (ADD)=5.45E-04, OR=0.5887 Adjusted P (ADD)=5.45E-04, OR=0.5887 SNPs from top 1000 from our combined CAMH/IoP GWAS for BPAD,...... SNPs from top 1000 from our combined CAMH/IoP GWAS for BPAD, for which at least one other non-overlapping GWAS also shows association at same gene. More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CNTNAP5 contactin associated protein-like 5 2q14.1 2(0/2/0)

SNPs in LD with rs2420864 (count: 2) View in gBrowse (chr2:124456142..124524333 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)