SNP Report

Basic Info
Name rs2360111 dbSNP Ensembl
Location chr17:928427 - 928427(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.338458
Functional Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000576991); intron_variant(ENST00000336868, ENST00000571338, ENST00000575171); non_coding_transcript_variant(ENST00000571338, ENST00000575171)
No. of Studies 2 (Positive: 0; Negative: 2; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Ollila, H. M.,2009 C/T FBAT: P-value = 0.217596 FBAT: P-value = 0.217596 No significant association was observed No significant association was observed Negative
Baum, A. E., 2008 (a) G P-value = 0.0007 when genotyped individually in the test sam...... P-value = 0.0007 when genotyped individually in the test sample (NIMH); P-value = 0.048 when individually genotyped in the Replication sample (German); P-value = 0.0003 in the combined dataset. OR (95% CI)=1.23 (1.10-1.37) More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NXN nucleoredoxin 17p13 1(0/1/0)

SNPs in LD with rs2360111 (count: 0) View in gBrowse (chr17:928427..928427 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)