BDgene

SNP Report

Basic Info
Name rs2241802 dbSNP Ensembl
Location chr8:28527195 - 28527195(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.457668
Functional Annotation synonymous_variant; upstream_gene_variant.
Consequence to Transcript synonymous_variant(ENST00000240093, ENST00000537916); upstream_gene_variant(ENST00000365541)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Hashimoto, R.,2005(b) G/A Allelic association: P-value = 0.94 for BP Allelic association: P-value = 0.94 for BP No significant associations were found in BD. No significant associations were found in BD. Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
FZD3 frizzled class receptor 3 8p21 1(0/1/0)
RNA5SP259 RNA, 5S ribosomal pseudogene 259 8p21.1 Mapped by Literature SNP

SNPs in LD with rs2241802 (count: 16) View in gBrowse (chr8:28498190..28578151 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 16)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Hashimoto, R.,2005(b) Allelic association:P-value = 0.85 for SZ No significant association was observed in SZ. Negative

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Hashimoto, R.,2005(b) Allelic association:P-value = 0.96 for MDD No association was observed in MDD. Negative