SNP Report

Basic Info
Name rs2241165 dbSNP Ensembl
Location chr2:170821869 - 170821869(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.381789
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000344257, ENST00000358196, ENST00000375272, ENST00000414527, ENST00000429023, ENST00000445006, ENST00000454603, ENST00000455008, ENST00000456864, ENST00000493875, ENST00000625689); NMD_transcript_variant(ENST00000414527, ENST00000493875); non_coding_transcript_exon_variant(ENST00000485013); non_coding_transcript_variant(ENST00000429023, ENST00000485013); upstream_gene_variant(ENST00000418106, ENST00000451730, ENST00000455988, ENST00000486850)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Geller, B., 2008 A FBAT X2=5.2, df=1, P-value = 0.022. The empirica...... FBAT X2=5.2, df=1, P-value = 0.022. The empirical level of significance for this test using the Monte Carlo method in FBAT was P-value = 0.025. More... The FBAT analyses showed preferential transmission of the rs...... The FBAT analyses showed preferential transmission of the rs2241165 A allele. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GAD1 glutamate decarboxylase 1 (brain, 67kDa) 2q31 2(1/1/0)

SNPs in LD with rs2241165 (count: 3) View in gBrowse (chr2:170805829..170826597 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)