BDgene

SNP Report

Basic Info
Name rs16917237 dbSNP Ensembl
Location chr11:27680836 - 27680836(1)
Variant Alleles G/T
Ancestral Allele G
Minor Allele T
Minor Allele Frequence 0.221446
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000499008, ENST00000501176, ENST00000501663, ENST00000530686); intron_variant(ENST00000314915, ENST00000356660, ENST00000395978, ENST00000395980, ENST00000395981, ENST00000395983, ENST00000395986, ENST00000418212, ENST00000420794, ENST00000438929, ENST00000499568, ENST00000500662, ENST00000502161, ENST00000525950, ENST00000530786, ENST00000530861, ENST00000532997, ENST00000533131, ENST00000533246, ENST00000584049); NMD_transcript_variant(ENST00000530786); non_coding_transcript_variant(ENST00000499568, ENST00000500662, ENST00000502161, ENST00000584049)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Ivanova, M. A.,2012 G/T Case–control study:G allele:78.40%/70.95%(case/control); P...... Case–control study:G allele:78.40%/70.95%(case/control); P=0.015, narrow;77.65%/72.78%(case/control); P=0.086, broad; genotype T/T:3.14%/10.13%(case/control); P=0.002, narrow; 3.36%/8.33%(case/control); P=0.011, broad affection status. More... Significant differences were found for rs16917237 under both...... Significant differences were found for rs16917237 under both affection statuses. More... Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
BDNF brain-derived neurotrophic factor 11p14.1 37(24/12/1)
BDNF-AS BDNF antisense RNA 11p14.1 Mapped by Literature SNP

SNPs in LD with rs16917237 (count: 29) View in gBrowse (chr11:27520076..27706992 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 29)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016