BDgene

SNP Report

Basic Info
Name rs10791345 dbSNP Ensembl
Location chr11:134142118 - 134142118(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.154153
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000299106, ENST00000441717, ENST00000524969, ENST00000531302, ENST00000532165, ENST00000532252, ENST00000534549); NMD_transcript_variant(ENST00000532252); non_coding_transcript_variant(ENST00000524969, ENST00000531302, ENST00000532165)
No. of Studies 2 (Positive: 0; Negative: 1; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Ollila, H. M.,2009 G/A FBAT: P-value = 0.672997 FBAT: P-value = 0.672997 No significant association was observed No significant association was observed Negative
Baum, A. E., 2008 (b) G Random effects P-value = E-06; DerSimonian-Laird (random ef...... Random effects P-value = E-06; DerSimonian-Laird (random effects) OR (95% CI)=1.25 (1.14-1.36) More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
JAM3 junctional adhesion molecule 3 11q25 2(1/1/0)

SNPs in LD with rs10791345 (count: 9) View in gBrowse (chr11:134070278..134142118 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 9)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016