SNP Report

Basic Info

Name	rs10894778 dbSNP Ensembl
Location	chr11:134125113 - 134125113(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.26238
Functional Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000299106, ENST00000441717, ENST00000531302, ENST00000532252, ENST00000534549); NMD_transcript_variant(ENST00000532252); non_coding_transcript_variant(ENST00000531302); upstream_gene_variant(ENST00000524969, ENST00000534330)
No. of Studies	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
JAM3	junctional adhesion molecule 3	11q25	2(1/1/0)
PTP4A2P2	protein tyrosine phosphatase type IVA, member 2 pseudogene 2	11q24-q25	Mapped by LD-proxy

SNPs in LD with rs10894778 (count: 0) View in gBrowse (chr11:134125113..134125113 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)