BDgene

SNP Report

Basic Info
Name rs10497212 dbSNP Ensembl
Location chr2:160108189 - 160108189(1)
Variant Alleles T/G
Ancestral Allele T
Minor Allele G
Minor Allele Frequence 0.207268
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000283249, ENST00000409583, ENST00000409872, ENST00000409967, ENST00000428609, ENST00000475438, ENST00000620391); NMD_transcript_variant(ENST00000409583); non_coding_transcript_variant(ENST00000475438)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Hattori, E.,2009 In GWAS: Allelic P-value = 0.0361, Genotypic P-value = 0.008...... In GWAS: Allelic P-value = 0.0361, Genotypic P-value = 0.00861, Recessive P-value = 0.014, HWE P-value = 0.8909; in Follow-up study: MAF=0.13, Allelic P-value = 0.01946, Allelic Q-value=0.5154, HWE P-value = 0.09258 More... Significant association was observed in both GWAS and Follow...... Significant association was observed in both GWAS and Follow-up study. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ITGB6 integrin, beta 6 2q24.2 1(1/0/0)

SNPs in LD with rs10497212 (count: 15) View in gBrowse (chr2:160059572..160194852 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 15)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016