Gene Report

Basic Info
Approved Symbol HMG20A
Symbol Alias HMGX1, FLJ10739, HMGXB1
Approved Name high mobility group 20A
Previous Name high-mobility group 20A
Name Alias HMG box domain containing 1
Location 15q24
Position chr15:77420412-77485607, 1
External Links HGNC: 5001
Entrez Gene: 10363
Ensembl: ENSG00000140382
UCSC: uc002bcr.3
No. of Studies 1 (Positive: 1; Negative: 0; trend: 0)
Overlap with SZ? YES
Overlap with MDD? NO
Gene related studies (count: 1)
Reference Tested Markers Statistical Values/Author Comments Result Category Comment on Study
Kajio, Y., 2014 SNP: rs7178572 The BD associations exhibited nominal significance for SNPs in BCL11A (rs243021, Puncorrected=0.0031) and HMG20A (rs7178572, Puncorrected=0.0043), Positive Comment on Study
Gene functional annotation
Gene related GO terms (count: 12)

GO terms by PBA (count: 3)

GO terms by database search (count: 9)

Gene related KEGG pathways (count: 0)

Gene related BioCarta pathways (count: 0)

Gene related interactors from protein-protein interactions data in HPRD (count: 7)

Related other genetic factors
Gene related SNPs (count: 11)

Literature-origin SNPs (count: 1)

LD-proxies (count: 10)

Gene related CNVs (count: 1)

Gene related other variants (count: 0)

Gene related regions (count: 2)

Overlap with schizophrenia (SZ) and major depressive disorder (MDD)
Gene relationship with SZ

Overlap with SZ from cross-disorder studies (count: 1)

Overlap with SZ from candidate gene intersection analysis (count: 0)

Gene relationship with MDD

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Region: chr15:77420412..77485607 View in gBrowse
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