BDgene

Core Gene from Gene Prioritization Pathways from PBA (Pathway-based Analysis) Enriched Pathways for Core Genes Enriched Pathways for Cross-disorder Genes

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Gene Report

Basic information

Related studies

Functional annotation

Related other genetic factors

Overlap with SZ and MDD

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Basic Info

Approved Symbol	CADM2
Previous Symbol	IGSF4D
Symbol Alias	NECL3, Necl-3, SynCAM2
Approved Name	cell adhesion molecule 2
Previous Name	immunoglobulin superfamily, member 4D
Name Alias	nectin-like 3
Location	3p12.2
Position	chr3:84958981-86074429, 1
External Links	HGNC: 29849 Entrez Gene: 253559 Ensembl: ENSG00000175161 UCSC: uc003dqj.3
No. of Studies	1 (Positive: 0; Negative: 1; trend: 0)
Overlap with SZ?	NO
Overlap with MDD?	NO

Gene related studies (count: 1)

Reference	Tested Markers	Statistical Values/Author Comments	Result Category	Comment on Study
Chen, D. T.,2011	SNP: rs17023019, rs2875907	No significant association was observed.	Negative	Comment on Study

Gene functional annotation

Gene related GO terms (count: 12)

GO terms by PBA (count: 5)

GO terms by database search (count: 7)

Gene related KEGG pathways (count: 0)

Gene related BioCarta pathways (count: 0)

Gene related interactors from protein-protein interactions data in HPRD (count: 0)

Related other genetic factors

Gene related SNPs (count: 2)

Literature-origin SNPs (count: 2)

rs_ID	Location	Functional Annotation	No. of Studies (Positive/Negative/Trend)
rs2875907	chr3:85469430 - 85469430(1)	intron_variant	1(0/1/0)
rs17023019	chr3:85565122 - 85565122(1)	intron_variant	1(0/1/0)

LD-proxies (count: 0)

Gene related CNVs (count: 0)

Gene related other variants (count: 0)

Gene related regions (count: 1)

Overlap with schizophrenia (SZ) and major depressive disorder (MDD)

Gene relationship with SZ

Gene relationship with MDD

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Region: chr3:84958981..86074429 View in gBrowse