Study Report

Basic Info
Reference |
Kishi, T.,2011(b) PMID: 20594600
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Citation |
Kishi, T., T. Okochi, et al. (2011). "Serotonin 1A receptor gene, schizophrenia and bipolar disorder: an association study and meta-analysis." Psychiatry Res 185(1-2): 20-26.
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Disease Type |
Bipolar Disorder & Schizophrenia |
Study Design |
case-control |
Study Type |
Candidate-gene association study |
Sample Size |
857 schizophrenic patients, 1028 BP patients and 1810 controls |
SNP/Region/Marker Size |
3 SNPs |
Predominant Ethnicity |
Mongloid |
Population |
Japanese |

Detail Info
Sample Diagnosis |
DSM |
Sample Status |
715 schizophrenic patients and 1017 BP patients were diagnosed according to Diagnostic and Statistical Manual for Mental Disorders (DSM)-IV criteria with the consensus of at least two experienced psychiatrists on the basis of unstructured interviews and a review of medical records. As many as 142 schizophrenic patients and 11 BP patients underwent the Structured Clinical Interview for DSM-IV disorders (SCID-1). Schizophrenic patients were grouped according to the following DSM-IV subtypes of schizophrenia: paranoid type (n=221), disorganised type (n=224), Catatonic type (n=29), residual type (n=143) and undifferentiated type (n=125). A total of 1633 controls were also diagnosed according to DSM-IV criteria with the consensus of at least two experienced psychiatrists on the basis of unstructured interviews, of which 46 and 131 controls underwent the Mini-International Neuropsychiatric Interview (MINI) and SCID-1, respectively. None had severe medical complications such as liver cirrhosis, renal failure, heart failure or other Axis-I disorders according to DSM-IV. Controls included hospital staff and medical students. Our control samples may not be representative of the general population. |
Technique |
genotyping |
Statistical Method |
Marker-trait association analysis was used to evaluate allele- and genotype-wise association with the chi-square test (SAS/Genetics, release 8.2, SAS Japan Inc., Tokyo, Japan). The distribution of patient characteristics in the schizophrenia group, BP group and healthy control group was analysed using a t test or a chi-square test.A haplotype-wise association analysis was done with a likelihood ratio test using the COCAPHASE2.403 program (Dudbridge, 2003). |
Result Summary |
Two association studies for schizophrenia and three association studies for BP, including this study, met our criteria for the meta-analysis of rs6295. We found an association between HTR1A and Japanese BP in a haplotype-wise analysis, the significance of which remained after Bonferroni correction. In addition, we detected an association between rs6295 and BP in the meta-analysis (fixed model: P(Z)=0.000400). However, we did not detect an association between HTR1A and schizophrenia in the allele/genotype-wise, haplotype-wise or meta-analysis. HTR1A may play an important role in the pathophysiology of BP, but not schizophrenia in the Japanese population. In the meta-analysis, rs6295 in HTR1A was associated with BP patients. |

Genetic factors reported by this study for BD

SNPs reported by this study for BD (count: 2)
SNP |
Related Gene(s) |
Allele Change |
Risk Allele |
Statistical Values |
Author Comments |
Result Category |
rs6295 |
HTR1A
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C>G |
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For BD, chi-square tests: genotype, P-value = 0.0116, corrected P-value = 0.139; allele, P-value = 0.00337, corrected P-value = 0.0404.Meta analysis: fixed model: pooled OR=0.794, 95% CI=0.641-0.983, P(Z)=0.0344).No publication bias was found (t=0.656, p=0.536).
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Significant associations were found in both allele and genot......
Significant associations were found in both allele and genotype association.
More...
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Positive
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rs878567 |
HTR1A
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C>T |
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For BD, chi-square tests: genotype, P-value = 0.00000183, corrected P-value = 0.000022; allele, P-value = 0.00000212, corrected P-value = 0.0000254
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Significant associations were found in both allele and genot......
Significant associations were found in both allele and genotype association.
More...
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Positive
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Haplotypes reported by this study for BD (count: 2)
Markers |
Haplotype |
Related Gene(s)/Region(s) |
Statistical Values |
Author Comments |
Result Category |
rs6295 - rs878567 |
C-C |
HTR1A
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Haplotype analysis:likelihood ratio test:OR=1.38, 95%CI=1.19-1.59, individual P-value = 1.76E-05; global P-value = 2.03E-05, corrected global P-value = 2.44E-05 for BD
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Significant association was found in both individual P-value......
Significant association was found in both individual P-value and global P-value in BD.
More...
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Positive
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rs6295 - rs878567 |
G-C |
HTR1A
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Haplotype analysis:likelihood ratio test:OR=1.38, 95%CI=1.19-1.59, individual P-value = 1.76E-05; global P-value = 2.03E-05, corrected global P-value = 2.44E-05 for BD
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Significant association was found in both individual P-value......
Significant association was found in both individual P-value and global P-value in BD.
More...
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Positive
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Genes reported by this study for BD (count: 1)
Gene |
Statistical Values/Author Comments |
Result Category |
HTR1A |
HTR1A may play an important role in the pathophysiology of BP, but not schizophrenia in the Japanese......
HTR1A may play an important role in the pathophysiology of BP, but not schizophrenia in the Japanese population.
More...
|
Positive
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Genetic factors reported by this study for SZ and/or MDD

SNPs reported by this study for SZ/MDD
Disease |
SNP |
Related Gene(s) |
Statistical Values |
Description |
Result Category |
SZ |
rs6295 |
HTR1A
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For SZ, chi-square tests:genotype, P-value = 0.12;allele, P-value = 0.146;meta analysis:random model:pooled OR=0.793, 95% CI=0.387-1.623, P(Z)=0.526 |
No significant association was observed. |
Negative |
SZ |
rs878567 |
HTR1A
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For SZ, chi-square tests:genotype, P-value = 0.0606, corrected P-value = 0.286;allele, P-value = 0.0238 |
No significant association was observed. |
Negative |

Haplotypes reported by this study for SZ/MDD
Disease |
Markers |
Haplotype |
Related Gene(s)/Region(s) |
Statistical Values |
Description |
Result Category |
SZ |
rs6295 - rs878567 |
C-C |
HTR1A
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Haplotype analysis:likelihood ratio test:OR=1.20, 95%CI=0.971-1.47, individual P-value = 0.0921; global P-value = 0.0935 |
No significant association was observed in SZ. |
Negative |
SZ |
rs6295 - rs878567 |
G-C |
HTR1A
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Haplotype analysis:likelihood ratio test:OR=1.20, 95%CI=0.971-1.47, individual P-value = 0.0921; global P-value = 0.0935 |
No significant association was observed in SZ. |
Negative |

Genes reported by this study for SZ/MDD
Disease |
Gene |
Description |
Result Category |
SZ |
HTR1A |
HTR1A may play an important role in the pathophysiology of BP, but not schizophrenia in the Japanese population. |
Negative |