SNP Report

Basic Info
Name |
rs9960767
dbSNP
Ensembl
|
Location |
chr18:55487771 - 55487771(1) |
Variant Alleles |
A/C |
Ancestral Allele |
A |
Minor Allele |
C |
Minor Allele Frequence |
0.138379 |
Functional Annotation |
downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
|
Consequence to Transcript |
downstream_gene_variant(ENST00000587660); intron_variant(ENST00000354452, ENST00000356073, ENST00000398339, ENST00000537578, ENST00000540999, ENST00000543082, ENST00000562543, ENST00000562847, ENST00000563824, ENST00000563888, ENST00000564343, ENST00000564403, ENST00000564999, ENST00000565018, ENST00000565124, ENST00000565580, ENST00000565908, ENST00000566279, ENST00000566286, ENST00000566514, ENST00000567880, ENST00000568147, ENST00000568169, ENST00000568673, ENST00000568740, ENST00000569357, ENST00000616053, ENST00000625716, ENST00000626425, ENST00000626595, ENST00000627136, ENST00000627320, ENST00000627685, ENST00000627784, ENST00000629387, ENST00000630224, ENST00000630319, ENST00000635822, ENST00000636400, ENST00000636751, ENST00000637115, ENST00000637239, ENST00000638154); NMD_transcript_variant(ENST00000569357, ENST00000627320, ENST00000630224, ENST00000636751, ENST00000637115); non_coding_transcript_variant(ENST00000565580, ENST00000625716, ENST00000627136, ENST00000637239); upstream_gene_variant(ENST00000586467) |
No. of Studies |
2 (Positive: 0; Negative: 2; Trend: 0) |
Source |
Literature |
Overlap with SZ? |
YES
|
Overlap with MDD? |
NO
|

SNP related studies (count: 2)

SNP related genes (count: 2)

Overlap with SZ from cross-disorder studies (count: 1)
Reference |
Statistical Result |
Description |
Result Category |
Steinberg, S.,2012 |
Association results in schizophrenia follow-up samples(10,671 cases; 23,900 controls):OR(95% CI) = 1.14 (1.06, 1.23),P-value = 0.00057 |
No significant association was observed. |
Negative |

Overlap with MDD from cross-disorder studies (count: 0)