BDgene

SNP Report

Basic Info
Name rs967771 dbSNP Ensembl
Location chr5:161335167 - 161335167(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.113219
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000274547, ENST00000353437, ENST00000393959, ENST00000517547, ENST00000517901, ENST00000520240, ENST00000612710)
No. of Studies 2 (Positive: 2; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2008 (b) A/G A Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0278, Gene-wide P-value = 0.2058 (P values were based on permutation for all SNPs in each gene). More... Positive
Perlis, 2008 Mean X2=7.33, P-value = 0.008 in gene-based assoc...... Mean X2=7.33, P-value = 0.008 in gene-based association tests More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GABRB2 gamma-aminobutyric acid (GABA) A receptor, beta 2 5q34 1(1/0/0)

SNPs in LD with rs967771 (count: 3) View in gBrowse (chr5:161335167..161434582 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)