BDgene

SNP Report

Basic Info
Name rs960914 dbSNP Ensembl
Location chr8:28503460 - 28503460(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.361022
Functional Annotation downstream_gene_variant; intron_variant.
Consequence to Transcript downstream_gene_variant(ENST00000523546, ENST00000582598); intron_variant(ENST00000240093, ENST00000537916)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Hashimoto, R.,2005(b) T/C Allelic association: P-value = 0.23 for BP Allelic association: P-value = 0.23 for BP No significant associations were found in BD. No significant associations were found in BD. Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
MIR4288 microRNA 4288 8 Mapped by Literature SNP
FZD3 frizzled class receptor 3 8p21 1(0/1/0)

SNPs in LD with rs960914 (count: 27) View in gBrowse (chr8:28503460..28584875 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 27)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Hashimoto, R.,2005(b) Allelic association:P-value = 0.91 for SZ No significant association was observed in SZ. Negative

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Hashimoto, R.,2005(b) Allelic association:P-value = 0.61 for MDD No association was observed in MDD. Negative