SNP Report

Basic Info
Name rs9554603 dbSNP Ensembl
Location chr13:99494828 - 99494828(1)
Variant Alleles G/T
Ancestral Allele T
Minor Allele G
Minor Allele Frequence 0.275359
Functional Annotation downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000366259, ENST00000625254, ENST00000625369); intron_variant(ENST00000630421); non_coding_transcript_exon_variant(ENST00000626729); non_coding_transcript_variant(ENST00000626729, ENST00000630421); upstream_gene_variant(ENST00000625287, ENST00000626308, ENST00000627052)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Smith, E. N.,2011 G/T Genome-Wide Association: OR=0.74, P-value = 9.0E-06 Genome-Wide Association: OR=0.74, P-value = 9.0E-06 Suggestive association was found. Suggestive association was found. Trend

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
LINC00449 long intergenic non-protein coding RNA 449 13q32.3 Mapped by Literature SNP
TM9SF2 transmembrane 9 superfamily member 2 13q32.2 1(0/0/1)

SNPs in LD with rs9554603 (count: 0) View in gBrowse (chr13:99494828..99494828 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)