SNP Report

Basic Info

Name	rs9517312 dbSNP Ensembl
Location	chr13:98451601 - 98451601(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.210663
Functional Annotation	3_prime_UTR_variant; downstream_gene_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000319562, ENST00000376554, ENST00000397517, ENST00000539966); downstream_gene_variant(ENST00000376547, ENST00000418038, ENST00000444574, ENST00000594346, ENST00000595437, ENST00000597596, ENST00000600380, ENST00000627049)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Yosifova, A.,2009	A/G		Allelic association: P-value = 0.25 Allelic association: P-value = 0.25	No significant association was observed No significant association was observed	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
FARP1	FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)	13q32.2	1(1/0/0)
STK24	serine/threonine kinase 24	13q31.2-q32.3	2(1/1/0)

SNPs in LD with rs9517312 (count: 2) View in gBrowse (chr13:98451601..98452435 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs6956		3_prime_UTR_variant; downstream_gene_variant	1.0[CEU]
rs3742134		3_prime_UTR_variant; downstream_gene_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)