BDgene

SNP Report

Basic Info
Name rs942518 dbSNP Ensembl
Location chr9:114510578 - 114510578(1)
Variant Alleles G/A
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.339657
No. of Studies 3 (Positive: 0; Negative: 3; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 3)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Takata, A.,2011(a) A/G Fisher's exact test: allele P-value = 0.4587, genotype P-val...... Fisher's exact test: allele P-value = 0.4587, genotype P-value = 0.3087 More... No significant association was observed in BD. No significant association was observed in BD. Negative
Ollila, H. M.,2009 A/G FBAT: P-value = 0.243882 FBAT: P-value = 0.243882 No significant association was observed No significant association was observed Negative
Baum, A. E., 2008 (a) G P-value = 0.035 when genotyped individually in the test samp...... P-value = 0.035 when genotyped individually in the test sample (NIMH); P-value = 0.001 when individually genotyped in the Replication sample (German); P-value = 0.0001 in the combined dataset. OR (95% CI)=1.44 (1.20-1.74) More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DFNB31 deafness, autosomal recessive 31 9q32 3(2/1/0)

SNPs in LD with rs942518 (count: 11) View in gBrowse (chr9:114499319..114515015 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 11)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)