SNP Report

Basic Info

SNP related studies (count: 3)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Takata, A.,2011(a)	A/G		Fisher's exact test: allele P-value = 0.4587, genotype P-val...... Fisher's exact test: allele P-value = 0.4587, genotype P-value = 0.3087 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative
Ollila, H. M.,2009	A/G		FBAT: P-value = 0.243882 FBAT: P-value = 0.243882	No significant association was observed No significant association was observed	Negative
Baum, A. E., 2008 (a)		G	P-value = 0.035 when genotyped individually in the test samp...... P-value = 0.035 when genotyped individually in the test sample (NIMH); P-value = 0.001 when individually genotyped in the Replication sample (German); P-value = 0.0001 in the combined dataset. OR (95% CI)=1.44 (1.20-1.74) More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
DFNB31	deafness, autosomal recessive 31	9q32	3(2/1/0)

SNPs in LD with rs942518 (count: 11) View in gBrowse (chr9:114499319..114515015 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs1408525		1.0[CHB]; 0.946[JPT]
rs1408524	upstream_gene_variant	1.0[CEU]; 1.0[TSI]; 0.857[CHB]; 0.898[CHD]; 1.0[JPT]
rs1010519		0.95[CHB]; 0.945[JPT]
rs10759715		0.879[CEU]
rs4979416	downstream_gene_variant; intron_variant	0.864[TSI]
rs1535963	upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs998547		1.0[CHB]; 0.875[CHD]; 0.946[JPT]
rs16929770		1.0[TSI]; 0.945[CHB]; 0.945[CHD]; 0.945[JPT]
rs2296261	downstream_gene_variant; intron_variant; upstream_gene_variant	0.945[JPT]
rs4979415	downstream_gene_variant; intron_variant	1.0[TSI]
rs998548		0.897[CHB]; 0.818[CHD]; 0.89[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)