SNP Report

Basic Info
Name rs915841 dbSNP Ensembl
Location chr21:42259328 - 42259328(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.209864
Functional Annotation intron_variant; non_coding_transcript_variant; synonymous_variant.
Consequence to Transcript intron_variant(ENST00000343687, ENST00000347800, ENST00000361802, ENST00000398449, ENST00000398457, ENST00000450121, ENST00000462050); non_coding_transcript_variant(ENST00000462050); synonymous_variant(ENST00000398437)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2008 (b) A/G G Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0494, Gene-wide P-value = 0.5205 (P values were based on permutation for all SNPs in each gene). More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ABCG1 ATP-binding cassette, sub-family G (WHITE), member 1 21q22.3 1(0/1/0)

SNPs in LD with rs915841 (count: 7) View in gBrowse (chr21:42253367..42261846 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 7)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)