SNP Report

Basic Info

Name	rs895682 dbSNP Ensembl
Location	chr11:13323685 - 13323685(1)
Variant Alleles	T/C
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.0139776
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000389707, ENST00000401424, ENST00000403290, ENST00000403510, ENST00000480685, ENST00000482049, ENST00000527998, ENST00000529050, ENST00000529388, ENST00000529825, ENST00000530357, ENST00000531665, ENST00000533520, ENST00000534544); non_coding_transcript_variant(ENST00000480685)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Mansour, H. A., 2006	A/C		TDT P-value = 0.008, X²=7.00, df=1 in the samples...... TDT P-value = 0.008, X²=7.00, df=1 in the samples combined, Pittsburgh Trends test=0.23 for BDI More...	We observed significant transmission bias when we analyzed t...... We observed significant transmission bias when we analyzed transmission distortion of the bipolar samples jointly More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ARNTL	aryl hydrocarbon receptor nuclear translocator-like	11p15	7(5/2/0)

SNPs in LD with rs895682 (count: 0) View in gBrowse (chr11:13323685..13323685 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Mansour, H. A., 2006	TDT P-value = 0.697, Trends test=0.846 for Pittsburgh SZ/SZA		Negative

Overlap with MDD from cross-disorder studies (count: 0)