SNP Report

Basic Info

Name	rs8040009 dbSNP Ensembl
Location	chr15:92501109 - 92501109(1)
Variant Alleles	T/C
Ancestral Allele	C
Minor Allele	C
Minor Allele Frequence	0.293331
Functional Annotation	downstream_gene_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000556865); non_coding_transcript_exon_variant(ENST00000624458); non_coding_transcript_variant(ENST00000624458)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Lee, M. T.,2011	T/C		Genome-wide association: in joint analysis, T vs. C, P-value...... Genome-wide association: in joint analysis, T vs. C, P-value = 6.05E-06; genotype , P-value = 6.38E-06 More...	Suggestive association was found. Suggestive association was found.	Trend

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ST8SIA2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	15q26	2(2/0/0)
C15orf32	chromosome 15 open reading frame 32	15q26.1	1(1/0/0)

SNPs in LD with rs8040009 (count: 1) View in gBrowse (chr15:92501109..92502812 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs737414		downstream_gene_variant	0.91[CHB]; 0.91[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)