BDgene

SNP Report

Basic Info
Name rs8040009 dbSNP Ensembl
Location chr15:92501109 - 92501109(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.293331
Functional Annotation downstream_gene_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000556865); non_coding_transcript_exon_variant(ENST00000624458); non_coding_transcript_variant(ENST00000624458)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Lee, M. T.,2011 T/C Genome-wide association: in joint analysis, T vs. C, P-value...... Genome-wide association: in joint analysis, T vs. C, P-value = 6.05E-06; genotype , P-value = 6.38E-06 More... Suggestive association was found. Suggestive association was found. Trend

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ST8SIA2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 15q26 2(2/0/0)
C15orf32 chromosome 15 open reading frame 32 15q26.1 1(1/0/0)

SNPs in LD with rs8040009 (count: 1) View in gBrowse (chr15:92501109..92502812 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)