SNP Report

Basic Info

Name	rs7934165 dbSNP Ensembl
Location	chr11:27710436 - 27710436(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.433706
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000314915, ENST00000395978, ENST00000395981, ENST00000525950, ENST00000530663, ENST00000532997); non_coding_transcript_variant(ENST00000530663)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Liu, L., 2008			Average PDT statistic P-value = 0.12 for the model 1; avera...... Average PDT statistic P-value = 0.12 for the model 1; average PDT statistic P-value = 0.24 for the model 2; average PDT statistic P-value = 0.58 for the model 3 between the SNP and bipolar disorder. More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
BDNF	brain-derived neurotrophic factor	11p14.1	37(24/12/1)

SNPs in LD with rs7934165 (count: 7) View in gBrowse (chr11:27643996..27725444 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs1519479	intron_variant; non_coding_transcript_variant	0.849[CEU]; 0.871[TSI]
rs11030101	5_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	0.96[CEU]
rs2049046	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.959[CEU]
rs11030096	intron_variant; non_coding_transcript_variant	0.922[CEU]; 0.912[TSI]
rs7931247	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]; 0.977[TSI]
rs2203877	intron_variant; non_coding_transcript_variant	0.922[CEU]; 0.912[TSI]
rs10767665	intron_variant; non_coding_transcript_variant	1.0[CEU]; 1.0[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)