BDgene

SNP Report

Basic Info
Name rs780148 dbSNP Ensembl
Location chr10:79175326 - 79175326(1)
Variant Alleles G/C
Ancestral Allele C
Minor Allele G
Minor Allele Frequence 0.236422
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000334512)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Sklar, P.,2011 C/G Primary GWAS P-value(GC)=0.0000466, OR=1.12; replication P-v...... Primary GWAS P-value(GC)=0.0000466, OR=1.12; replication P-value(1-sided)=0.23, OR=1.03; Combined GWAS and replication P-value(GC)=0.00014, OR=1.09 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ZMIZ1 zinc finger, MIZ-type containing 1 10q22.3 1(0/1/0)

SNPs in LD with rs780148 (count: 0) View in gBrowse (chr10:79175326..79175326 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016