SNP Report

Basic Info
Name rs7747960 dbSNP Ensembl
Location chr6:152470339 - 152470339(1)
Variant Alleles C/A
Ancestral Allele C
Minor Allele A
Minor Allele Frequence 0.248802
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000341594, ENST00000367248, ENST00000367253, ENST00000367255, ENST00000413186, ENST00000423061, ENST00000461872, ENST00000466159, ENST00000468937, ENST00000474655, ENST00000481502, ENST00000495090, ENST00000535896, ENST00000537750); NMD_transcript_variant(ENST00000474655); non_coding_transcript_variant(ENST00000461872, ENST00000468937, ENST00000481502, ENST00000535896)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Smith, E. N.,2011 A/C Genome-Wide Association: OR=1.29, P-value = 0.0007 Genome-Wide Association: OR=1.29, P-value = 0.0007 No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SYNE1 spectrin repeat containing, nuclear envelope 1 6q25.2 6(3/2/1)

SNPs in LD with rs7747960 (count: 0) View in gBrowse (chr6:152470339..152470339 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)