SNP Report

Basic Info

Name	rs7747960 dbSNP Ensembl
Location	chr6:152470339 - 152470339(1)
Variant Alleles	C/A
Ancestral Allele	C
Minor Allele	A
Minor Allele Frequence	0.248802
Functional Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000341594, ENST00000367248, ENST00000367253, ENST00000367255, ENST00000413186, ENST00000423061, ENST00000461872, ENST00000466159, ENST00000468937, ENST00000474655, ENST00000481502, ENST00000495090, ENST00000535896, ENST00000537750); NMD_transcript_variant(ENST00000474655); non_coding_transcript_variant(ENST00000461872, ENST00000468937, ENST00000481502, ENST00000535896)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Smith, E. N.,2011	A/C		Genome-Wide Association: OR=1.29, P-value = 0.0007 Genome-Wide Association: OR=1.29, P-value = 0.0007	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SYNE1	spectrin repeat containing, nuclear envelope 1	6q25.2	6(3/2/1)

SNPs in LD with rs7747960 (count: 0) View in gBrowse (chr6:152470339..152470339 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)