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SNP Report
Basic Info
| Name | rs7305141 dbSNP Ensembl | ||
|---|---|---|---|
| Location | chr12:79621793 - 79621793(1) | ||
| Variant Alleles | G/A | ||
| Ancestral Allele | A | ||
| Minor Allele | G | ||
| Minor Allele Frequence | 0.18111 | ||
| Functional Annotation | intron_variant; non_coding_transcript_variant. | ||
| Consequence to Transcript | intron_variant(ENST00000328827, ENST00000549050, ENST00000550006, ENST00000551712); non_coding_transcript_variant(ENST00000549050, ENST00000550006) | ||
| No. of Studies | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
| Overlap with SZ? | YES | ||
| Overlap with MDD? | YES | ||
SNP related studies (count: 1)
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Studies (Positive/Negative/Trend)  |
|---|---|---|---|
| PAWR | PRKC, apoptosis, WT1, regulator | 12q21.2 | 1(0/1/0) |
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 4)
Overlap with SZ from cross-disorder studies (count: 1)
| Reference | Statistical Result | Description | Result Category |
|---|---|---|---|
| Kishi, T., 2008 (a) | Hardy-Weinberg equilibrium P value=0.0556, genotypic P value=0.986, allelic P value=0.237 for schizophrenia compared with controls. | No association was detected with schizophrenia or MDD in allele/genotype-wise analyses. | Negative |
Overlap with MDD from cross-disorder studies (count: 1)
| Reference | Statistical Result | Description | Result Category |
|---|---|---|---|
| Kishi, T., 2008 (a) | Hardy-Weinberg equilibrium P value=0.372, genotypic P value=0.0855, allelic P value=0.205 for MDD compared with controls. | No association was detected with schizophrenia or MDD in allele/genotype-wise analyses. | Negative |