BDgene

SNP Report

Basic Info
Name rs7249968 dbSNP Ensembl
Location chr19:30220335 - 30220335(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.262181
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000588092); non_coding_transcript_variant(ENST00000588092)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Winham S.J., 2014 BD+BE: OR=1.79, P-value=1.76E-06; BD-BE: OR=1.15, P-value=0....... BD+BE: OR=1.79, P-value=1.76E-06; BD-BE: OR=1.15, P-value=0.1109 More... It showed little evidence for association with BD. It showed little evidence for association with BD. Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ZNF536 zinc finger protein 536 19q13.11 2(0/1/1)

SNPs in LD with rs7249968 (count: 3) View in gBrowse (chr19:30214840..30220335 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)