SNP Report

Basic Info

Name	rs7249968 dbSNP Ensembl
Location	chr19:30220335 - 30220335(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.262181
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000588092); non_coding_transcript_variant(ENST00000588092)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Winham S.J., 2014			BD+BE: OR=1.79, P-value=1.76E-06; BD-BE: OR=1.15, P-value=0....... BD+BE: OR=1.79, P-value=1.76E-06; BD-BE: OR=1.15, P-value=0.1109 More...	It showed little evidence for association with BD. It showed little evidence for association with BD.	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ZNF536	zinc finger protein 536	19q13.11	2(0/1/1)

SNPs in LD with rs7249968 (count: 3) View in gBrowse (chr19:30214840..30220335 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs7245985	downstream_gene_variant	0.939[CEU]; 0.905[TSI]
rs11667280	downstream_gene_variant	0.939[CEU]; 0.805[TSI]
rs7252787	downstream_gene_variant	0.939[CEU]; 0.968[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)