SNP Report

Basic Info

Name	rs7107287 dbSNP Ensembl
Location	chr11:13291422 - 13291422(1)
Variant Alleles	G/T
Ancestral Allele	G
Minor Allele	T
Minor Allele Frequence	0.316893
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000389707, ENST00000401424, ENST00000403290, ENST00000403510, ENST00000480685, ENST00000482049, ENST00000527998, ENST00000529050, ENST00000529388, ENST00000529825, ENST00000530357, ENST00000533520, ENST00000534544); non_coding_transcript_variant(ENST00000480685)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Mansour, H. A., 2006	G/T		TDT P-value = 0.047 in the samples combined, Pittsburgh Tren...... TDT P-value = 0.047 in the samples combined, Pittsburgh Trends test=0.033 for BDI More...	For the contrasts of genotype distributions for individuals ...... For the contrasts of genotype distributions for individuals from the Pittsburgh sample diagnosed with BD1 vs. the population in general, significant differences were detected. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ARNTL	aryl hydrocarbon receptor nuclear translocator-like	11p15	7(5/2/0)

SNPs in LD with rs7107287 (count: 40) View in gBrowse (chr11:13248001..13302983 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 40)

rs_ID	Functional Annotation	r²[population]
rs4757138	upstream_gene_variant	0.864[CEU]; 0.83[TSI]
rs12290622	intron_variant; non_coding_transcript_variant	0.906[CEU]; 0.887[TSI]
rs2279285	intron_variant; upstream_gene_variant	0.864[CEU]; 0.83[TSI]
rs11605518		0.808[CEU]
rs11022733		0.808[CEU]
rs11022754	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs2279284	intron_variant; upstream_gene_variant	0.951[CEU]; 0.909[TSI]
rs11022756	intron_variant; non_coding_transcript_variant	0.906[CEU]
rs11022738		0.902[CEU]; 0.879[TSI]
rs7109016	upstream_gene_variant	0.906[CEU]; 0.83[TSI]
rs11022742	upstream_gene_variant	0.951[CEU]; 0.909[TSI]
rs2403661		0.906[CEU]
rs900147	upstream_gene_variant	0.893[CEU]
rs11022750	intron_variant; non_coding_transcript_variant	1.0[CEU]; 1.0[TSI]
rs4414197	intron_variant; non_coding_transcript_variant	0.906[CEU]; 0.887[TSI]
rs6486116	intron_variant; non_coding_transcript_variant	0.862[TSI]
rs986721		0.808[CEU]
rs747601		0.808[CEU]
rs11022755	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs11022753	intron_variant; non_coding_transcript_variant	1.0[CEU]; 0.969[TSI]
rs10832007		0.808[CEU]
rs10766065		0.808[CEU]
rs2403662	intron_variant; non_coding_transcript_variant	0.906[CEU]
rs7949336	intron_variant; non_coding_transcript_variant	0.909[TSI]
rs10832006		0.806[CEU]
rs986720		0.808[CEU]
rs4146388	intron_variant; non_coding_transcript_variant	1.0[CEU]; 0.969[TSI]
rs7114573	intron_variant; non_coding_transcript_variant	0.862[TSI]
rs998089		0.902[CEU]; 0.909[TSI]
rs10766066		0.808[CEU]
rs1481880		0.808[CEU]
rs10832021	intron_variant; non_coding_transcript_variant	0.862[TSI]
rs10832012	upstream_gene_variant	0.902[CEU]; 0.909[TSI]
rs900145	upstream_gene_variant	0.899[CEU]; 0.85[TSI]
rs6486120	intron_variant; non_coding_transcript_variant	0.86[TSI]
rs7951393	intron_variant; non_coding_transcript_variant	0.838[TSI]
rs2279286	5_prime_UTR_variant; upstream_gene_variant	0.864[CEU]; 0.83[TSI]
rs10766073	intron_variant; non_coding_transcript_variant	0.857[CEU]; 0.879[TSI]
rs1481891	intron_variant; non_coding_transcript_variant	0.906[CEU]
rs4757141	intron_variant; non_coding_transcript_variant	1.0[CEU]; 1.0[TSI]

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Mansour, H. A., 2006	not analyzed for Pittsburgh SZ/SZA		Negative

Overlap with MDD from cross-disorder studies (count: 0)