SNP Report

Basic Info

Name	rs6861078 dbSNP Ensembl
Location	chr5:148433338 - 148433338(1)
Variant Alleles	T/G
Ancestral Allele	G
Minor Allele	T
Minor Allele Frequence	0.494409
Functional Annotation	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000296701, ENST00000340253, ENST00000394370, ENST00000505399, ENST00000513826); non_coding_transcript_exon_variant(ENST00000504447); non_coding_transcript_variant(ENST00000504447, ENST00000505399); upstream_gene_variant(ENST00000520980)
No. of Studies	1 (Positive: 0; Negative: 0; Trend: 1)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Feng, T.,2010			Fisher's exact tests: Empirical P-value(1, 000, 000 permutat...... Fisher's exact tests: Empirical P-value(1, 000, 000 permutations)=0.000071 More...	Suggestive association was found. Suggestive association was found.	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
FBXO38	F-box protein 38	5q33.1	2(1/0/1)

SNPs in LD with rs6861078 (count: 0) View in gBrowse (chr5:148433338..148433338 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)