SNP Report

Basic Info
Name rs6861078 dbSNP Ensembl
Location chr5:148433338 - 148433338(1)
Variant Alleles T/G
Ancestral Allele G
Minor Allele T
Minor Allele Frequence 0.494409
Functional Annotation intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000296701, ENST00000340253, ENST00000394370, ENST00000505399, ENST00000513826); non_coding_transcript_exon_variant(ENST00000504447); non_coding_transcript_variant(ENST00000504447, ENST00000505399); upstream_gene_variant(ENST00000520980)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Feng, T.,2010 Fisher's exact tests: Empirical P-value(1, 000, 000 permutat...... Fisher's exact tests: Empirical P-value(1, 000, 000 permutations)=0.000071 More... Suggestive association was found. Suggestive association was found. Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
FBXO38 F-box protein 38 5q33.1 2(1/0/1)

SNPs in LD with rs6861078 (count: 0) View in gBrowse (chr5:148433338..148433338 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)