SNP Report

Basic Info
Name rs673735 dbSNP Ensembl
Location chr18:11893392 - 11893392(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.238019
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000586844, ENST00000587381, ENST00000588103, ENST00000589829, ENST00000589859, ENST00000590501, ENST00000591667, ENST00000593001); intron_variant(ENST00000309976, ENST00000317235, ENST00000317251, ENST00000344987, ENST00000496196, ENST00000586364, ENST00000588072, ENST00000588186, ENST00000588191, ENST00000589267, ENST00000589731, ENST00000592331, ENST00000592447, ENST00000592894, ENST00000592977); NMD_transcript_variant(ENST00000317251, ENST00000496196); non_coding_transcript_exon_variant(ENST00000592180); non_coding_transcript_variant(ENST00000586364, ENST00000589731, ENST00000592180, ENST00000592447, ENST00000592894); upstream_gene_variant(ENST00000587724)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2009 C/T Allelic association: P-value = 0.056 Allelic association: P-value = 0.056 No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
MPPE1 metallophosphoesterase 1 18p11.21 2(2/0/0)

SNPs in LD with rs673735 (count: 0) View in gBrowse (chr18:11893392..11893392 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)