SNP Report

Basic Info

Name	rs673735 dbSNP Ensembl
Location	chr18:11893392 - 11893392(1)
Variant Alleles	C/T
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.238019
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000586844, ENST00000587381, ENST00000588103, ENST00000589829, ENST00000589859, ENST00000590501, ENST00000591667, ENST00000593001); intron_variant(ENST00000309976, ENST00000317235, ENST00000317251, ENST00000344987, ENST00000496196, ENST00000586364, ENST00000588072, ENST00000588186, ENST00000588191, ENST00000589267, ENST00000589731, ENST00000592331, ENST00000592447, ENST00000592894, ENST00000592977); NMD_transcript_variant(ENST00000317251, ENST00000496196); non_coding_transcript_exon_variant(ENST00000592180); non_coding_transcript_variant(ENST00000586364, ENST00000589731, ENST00000592180, ENST00000592447, ENST00000592894); upstream_gene_variant(ENST00000587724)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Yosifova, A.,2009	C/T		Allelic association: P-value = 0.056 Allelic association: P-value = 0.056	No significant association was observed No significant association was observed	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
MPPE1	metallophosphoesterase 1	18p11.21	2(2/0/0)

SNPs in LD with rs673735 (count: 0) View in gBrowse (chr18:11893392..11893392 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)