SNP Report

Basic Info
Name rs6734 dbSNP Ensembl
Location chr3:196935650 - 196935650(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.444688
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000321256, ENST00000427641, ENST00000428425, ENST00000447325); downstream_gene_variant(ENST00000323460, ENST00000411704, ENST00000419026, ENST00000422610, ENST00000434433, ENST00000445299, ENST00000448068, ENST00000452404, ENST00000455953, ENST00000463245, ENST00000468923, ENST00000479647, ENST00000482976); intron_variant(ENST00000467803); NMD_transcript_variant(ENST00000428425); non_coding_transcript_exon_variant(ENST00000463783); non_coding_transcript_variant(ENST00000463783, ENST00000467803); upstream_gene_variant(ENST00000447775)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Schosser, A.,2011 chi-square (X2) test: genotype, X2=0.6...... chi-square (X2) test: genotype, X2=0.651, P-value = 0.722; allele, X2=1.63, P-value = 0.201 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 3)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SENP5 SUMO1/sentrin specific peptidase 5 3q29 Mapped by Literature SNP
NCBP2-AS1 NCBP2 antisense RNA 1 3q29 Mapped by Literature SNP
NCBP2 nuclear cap binding protein subunit 2, 20kDa 3q29 1(0/1/0)

SNPs in LD with rs6734 (count: 21) View in gBrowse (chr3:196872451..196945969 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 21)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)