SNP Report

Basic Info

Name	rs516461 dbSNP Ensembl
Location	chr3:196938019 - 196938019(1)
Variant Alleles	T/A
Ancestral Allele	T
Minor Allele	A
Minor Allele Frequence	0.388778
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000323460, ENST00000455953, ENST00000482976); intron_variant(ENST00000321256, ENST00000411704, ENST00000422610, ENST00000427641, ENST00000428425, ENST00000447325, ENST00000452404, ENST00000468923, ENST00000479647); NMD_transcript_variant(ENST00000428425); non_coding_transcript_exon_variant(ENST00000463783); non_coding_transcript_variant(ENST00000463783, ENST00000468923, ENST00000479647); upstream_gene_variant(ENST00000447775, ENST00000467803, ENST00000602845)
No. of Studies	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 4)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SENP5	SUMO1/sentrin specific peptidase 5	3q29	Mapped by Literature SNP
NCBP2-AS1	NCBP2 antisense RNA 1	3q29	Mapped by Literature SNP
NCBP2	nuclear cap binding protein subunit 2, 20kDa	3q29	1(0/1/0)
NCBP2-AS2	NCBP2 antisense RNA 2 (head to head)	3q29	Mapped by LD-proxy

SNPs in LD with rs516461 (count: 0) View in gBrowse (chr3:196938019..196938019 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)