SNP Report

Basic Info
Name rs6693503 dbSNP Ensembl
Location chr1:19660801 - 19660801(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.437899
Functional Annotation downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000289749, ENST00000375136, ENST00000425400, ENST00000427894, ENST00000428975, ENST00000439664, ENST00000451758, ENST00000548815, ENST00000602293, ENST00000602384, ENST00000602450, ENST00000602662, ENST00000615215, ENST00000618761, ENST00000621723, ENST00000622566); upstream_gene_variant(ENST00000289753)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Fukuo, Y.,2010 A>G Association analysis: genotype P-value = 0.893, allele P-val...... Association analysis: genotype P-value = 0.893, allele P-value = 0.751 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 3)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
HTR6 5-hydroxytryptamine (serotonin) receptor 6, G protein-coupled 1p36-p35 3(1/2/0)
NBL1 neuroblastoma 1, DAN family BMP antagonist 1p36.3-p36.2 Mapped by Literature SNP
MINOS1-NBL1 MINOS1-NBL1 readthrough 1p36.13 Mapped by Literature SNP

SNPs in LD with rs6693503 (count: 3) View in gBrowse (chr1:19660801..19680394 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Fukuo, Y.,2010 Association analysis:genotype P-value = 0.977, allele P-value = 0.904 No significant association was observed. Negative