SNP Report

Basic Info

SNP related studies (count: 3)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Ollila, H. M.,2009	C/T		FBAT: P-value = 0.582353 FBAT: P-value = 0.582353	No significant association was observed No significant association was observed	Negative
Jiang, Y.,2011			Non-weighted test under H0: P-value(additive)=0.343, P-value...... Non-weighted test under H0: P-value(additive)=0.343, P-value(dominant)=0.211, P-value(recessive)=0.0000282; weighted test under H'0: P-value(additive)=0.167, P-value(dominant)=0.26, P-value(recessive)=0.00000787; logistic regression: P-value(additive)=0.284, P-value(dominant)=0.244, P-value(recessive)=0.000019 More...	Suggestive association was found. Suggestive association was found.	Trend
The Wellcome Trust Case Control Consortium, 2007		T	Genotypic P-value = 4.35E-06; Heterozygote OR (95%CI)=0.84 ...... Genotypic P-value = 4.35E-06; Heterozygote OR (95%CI)=0.84 (0.75-0.96); Homozygote OR (95%CI)=1.39 (1.13-1.69) More...	showing moderate evidence of association with BD showing moderate evidence of association with BD	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GLTSCR1L	GLTSCR1-like	6p21.1	Mapped by Literature SNP

SNPs in LD with rs6458307 (count: 1) View in gBrowse (chr6:42758611..42763377 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs6908950		intron_variant	0.88[CEU]; 0.951[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)