SNP Report

Basic Info

Name	rs6445358 dbSNP Ensembl
Location	chr3:52274829 - 52274829(1)
Variant Alleles	C/G
Ancestral Allele	G
Minor Allele	C
Minor Allele Frequence	0.491613
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000296490, ENST00000463624, ENST00000469000)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Forstner, A. J., 2015			P-value=2.23E-5 P-value=2.23E-5	After correction for multiple testing, nine miRNAs showed a ...... After correction for multiple testing, nine miRNAs showed a significant association with BD. More...	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
WDR82	WD repeat domain 82	3p21.2	Mapped by Literature SNP

SNPs in LD with rs6445358 (count: 6) View in gBrowse (chr3:52239405..52433247 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs7622851	upstream_gene_variant	1.0[CEU]
rs7614727	intron_variant; non_coding_transcript_variant	1.0[CEU]; 1.0[TSI]
rs648514	3_prime_UTR_variant	0.853[CEU]
rs11717383	downstream_gene_variant	0.961[CEU]; 1.0[TSI]
rs610060	non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]; 0.95[TSI]
rs1060330	3_prime_UTR_variant; downstream_gene_variant	1.0[CEU]; 1.0[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)