SNP Report

Basic Info

Name	rs6293 dbSNP Ensembl
Location	chr9:137156786 - 137156786(1)
Variant Alleles	A/G
Ancestral Allele	G
Minor Allele	G
Minor Allele Frequence	0.140775
Functional Annotation	NMD_transcript_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; synonymous_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000350902); non_coding_transcript_exon_variant(ENST00000471122); non_coding_transcript_variant(ENST00000471122); synonymous_variant(ENST00000350902, ENST00000371546, ENST00000371550, ENST00000371553, ENST00000371555, ENST00000371559, ENST00000371560, ENST00000371561); upstream_gene_variant(ENST00000485413)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Georgi, A., 2006			data not shown data not shown	Allele and haplotype frequencies did not differ between case...... Allele and haplotype frequencies did not differ between cases and controls. More...	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
GRIN1	glutamate receptor, ionotropic, N-methyl D-aspartate 1	9q34.3	3(2/1/0)

SNPs in LD with rs6293 (count: 1) View in gBrowse (chr9:137156786..137159684 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs11794201		downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant	0.957[CEU]; 1.0[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)