SNP Report

Basic Info
Name rs60637 dbSNP Ensembl
Location chr12:51806958 - 51806958(1)
Variant Alleles C/A/G/T
Ancestral Allele C
Minor Allele A
Minor Allele Frequence 0.489018
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant; NMD_transcript_variant; synonymous_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000636945, ENST00000637709); downstream_gene_variant(ENST00000565518); NMD_transcript_variant(ENST00000636945, ENST00000637709); synonymous_variant(ENST00000354534, ENST00000355133, ENST00000545061, ENST00000599343, ENST00000627620)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Wang, Y., 2008 C/A Allelic P-value = 0.3244, permutated P-value = 0.7408; geno...... Allelic P-value = 0.3244, permutated P-value = 0.7408; genotypic P-value = 0.5383 More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SCN8A sodium channel, voltage gated, type VIII alpha subunit 12q13.1 1(1/0/0)

SNPs in LD with rs60637 (count: 25) View in gBrowse (chr12:51774913..51830007 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 25)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)