BDgene

SNP Report

Basic Info
Name rs592403 dbSNP Ensembl
Location chr5:161292977 - 161292977(1)
Variant Alleles A/C
Ancestral Allele C
Minor Allele A
Minor Allele Frequence 0.484625
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000274547, ENST00000393959); downstream_gene_variant(ENST00000353437, ENST00000517547, ENST00000517901, ENST00000520240)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2008 (b) A/C C Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0198, Gene-wide P-value = 0.2517 (P values were based on permutation for all SNPs in each gene). More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GABRB2 gamma-aminobutyric acid (GABA) A receptor, beta 2 5q34 1(1/0/0)

SNPs in LD with rs592403 (count: 3) View in gBrowse (chr5:161281834..161292977 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)