BDgene

SNP Report

Basic Info
Name rs524610 dbSNP Ensembl
Location chr5:153493420 - 153493420(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.460264
Functional Annotation intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000285900, ENST00000340592, ENST00000448073, ENST00000474198, ENST00000481559, ENST00000517469, ENST00000518142, ENST00000518783, ENST00000518862, ENST00000520353, ENST00000521843); non_coding_transcript_variant(ENST00000474198, ENST00000481559, ENST00000517469, ENST00000518862, ENST00000520353); upstream_gene_variant(ENST00000492291)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kerner, B.,2009 A/G FBAT: Wave 1: Z-score=3.3, P-value = 0.001; Waves 1-4: Z-sco...... FBAT: Wave 1: Z-score=3.3, P-value = 0.001; Waves 1-4: Z-score=2.8, P-value = 0.005 More... Significant association was observed in Wave 1 and Wave 1-4. Significant association was observed in Wave 1 and Wave 1-4. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GRIA1 glutamate receptor, ionotropic, AMPA 1 5q33 2(2/0/0)

SNPs in LD with rs524610 (count: 0) View in gBrowse (chr5:153493420..153493420 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)