SNP Report

Basic Info

Name	rs5028114 dbSNP Ensembl
Location	chr5:148632176 - 148632176(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.26278
Functional Annotation	intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000360693, ENST00000362016, ENST00000377888, ENST00000517929, ENST00000519495, ENST00000520086, ENST00000520514, ENST00000521124, ENST00000521530, ENST00000521735, ENST00000522588, ENST00000524063, ENST00000631296); NMD_transcript_variant(ENST00000522588, ENST00000524063); non_coding_transcript_variant(ENST00000519495, ENST00000521124)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Shi, J., 2008 (b)	A/G	A	Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0432, Gene-wide P-value = 0.2378 (P values were based on permutation for all SNPs in each gene). More...		Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
HTR4	5-hydroxytryptamine (serotonin) receptor 4, G protein-coupled	5q31-q33	2(1/1/0)

SNPs in LD with rs5028114 (count: 2) View in gBrowse (chr5:148616524..148632176 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs7701432		intron_variant; NMD_transcript_variant; non_coding_transcript_variant	1.0[CEU]
rs10223307		intron_variant; NMD_transcript_variant; non_coding_transcript_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)