BDgene

SNP Report

Basic Info
Name rs5028114 dbSNP Ensembl
Location chr5:148632176 - 148632176(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.26278
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000360693, ENST00000362016, ENST00000377888, ENST00000517929, ENST00000519495, ENST00000520086, ENST00000520514, ENST00000521124, ENST00000521530, ENST00000521735, ENST00000522588, ENST00000524063, ENST00000631296); NMD_transcript_variant(ENST00000522588, ENST00000524063); non_coding_transcript_variant(ENST00000519495, ENST00000521124)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2008 (b) A/G A Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0432, Gene-wide P-value = 0.2378 (P values were based on permutation for all SNPs in each gene). More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
HTR4 5-hydroxytryptamine (serotonin) receptor 4, G protein-coupled 5q31-q33 2(1/1/0)

SNPs in LD with rs5028114 (count: 2) View in gBrowse (chr5:148616524..148632176 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)