BDgene

SNP Report

Basic Info
Name rs4974539 dbSNP Ensembl
Location chr3:194341178 - 194341178(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.280152
Functional Annotation stop_gained.
Consequence to Transcript stop_gained(ENST00000323830, ENST00000429275)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Schosser, A.,2011 chi-square (X2) test: genotype, X2=7.5...... chi-square (X2) test: genotype, X2=7.58, P-value = 0.023; allele, X2=0.62, P-value = 0.43 More... Significant association was found . Significant association was found . Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CPN2 carboxypeptidase N, polypeptide 2 3q29 1(1/0/0)

SNPs in LD with rs4974539 (count: 2) View in gBrowse (chr3:194340832..194342424 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016