BDgene

SNP Report

Basic Info
Name rs4912138 dbSNP Ensembl
Location chr1:19666992 - 19666992(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.297724
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000289753)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Fukuo, Y.,2010 A>G Association analysis: genotype P-value = 0.136, allele P-val...... Association analysis: genotype P-value = 0.136, allele P-value = 0.0709 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
HTR6 5-hydroxytryptamine (serotonin) receptor 6, G protein-coupled 1p36-p35 3(1/2/0)

SNPs in LD with rs4912138 (count: 5) View in gBrowse (chr1:19652402..19682107 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 5)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Fukuo, Y.,2010 Association analysis:genotype P-value = 0.894, allele P-value = 0.938 No significant association was observed. Negative